ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10901-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTCCGTCGGTATATACCGA miRNA* GGTAATCATTACCAACGGAATAT mismatches: 3 bulges: 3 |
pre-miRNA
CGACGGAAATATTCCGTCGGTATATACCGACCGATTTGGAGACGGAATTATGTCCGTCGGTAATCATTACCAACGGAATATTTCCGTCG
dot-bracket secondary structure
(((((((((((((((((.((((..(((((((.((((((....)))......))).))))))).....)))).)))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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CGACGGAAATATTCCGTCGGTATATACCGACCGATTTGGAGACGGAATTATGTCCGTCGGTAATCATTACCAACGGAATATTTCCGTCG
dot-bracket secondary structure
(((((((((((((((((.((((..(((((((.((((((....)))......))).))))))).....)))).)))))))))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11741-akr: 1e-40 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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