ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10902-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCGATGGAATTATTCCGTCGGTG miRNA* TCGACGAAATTATTCCGTCGGTGAT mismatches: 2 bulges: 0 |
pre-miRNA
GCTGAAATATACCGATGGAATTATTCCGTCGGTGATTGGCAGTGGCATTTGGAGTAATTTTATTCCAACCCTCTGTAAAATATCGACGAAATTATTCCGT
CGGTGATTTAAGT
dot-bracket secondary structure
(((.((((.((((((((((((.(((.((((((((.((.((((.((...((((((((....)))))))).)).)))).)).)))))))).))).)))))))
))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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GCTGAAATATACCGATGGAATTATTCCGTCGGTGATTGGCAGTGGCATTTGGAGTAATTTTATTCCAACCCTCTGTAAAATATCGACGAAATTATTCCGT
CGGTGATTTAAGT
dot-bracket secondary structure
(((.((((.((((((((((((.(((.((((((((.((.((((.((...((((((((....)))))))).)).)))).)).)))))))).))).)))))))
))))))))).)))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10044-akr: 3e-23 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
