ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10903-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGTTGGCAGAGCTCAATCA miRNA* ATTGAGCCGTGCCAATATCG mismatches: 2 bulges: 0 |
pre-miRNA
AATTTGATGTTGGCAGAGCTCAATCAAATCAAAGCACTCAATGGTTGGGTTCTTTCATCTGATTGAGCCGTGCCAATATCGCATT
dot-bracket secondary structure
.....((((((((((..(((((((((.((.((((.(((((.....))))).)))).)).)))))))))..)))))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AATTTGATGTTGGCAGAGCTCAATCAAATCAAAGCACTCAATGGTTGGGTTCTTTCATCTGATTGAGCCGTGCCAATATCGCATT
dot-bracket secondary structure
.....((((((((((..(((((((((.((.((((.(((((.....))))).)))).)).)))))))))..)))))))))).....
SIMILARITIES| miRBase ptc-MIR171e: 4e-43 PMRD ptc-miR171e: 4e-43 microPC miR171: 0.000001 | UniProt no hits RFAM MIR171_1: 1e-37 |
Identical with: ptc-MIR171e from miRBase (MNEST041385) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
