ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10909-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGACCTAATATTCTTGGGTCTG miRNA* ACACCCAATATCATTGGGTCTGGT mismatches: 5 bulges: 0 |
pre-miRNA
CTGCAGAGCCAGACCTAATATTCTTGGGTCTGCCTGTAGAGCTACACCCAATATCATTGGGTCTGGTTGCTCATGCAG
dot-bracket secondary structure
(((((((((((((((((((..(.((((((..(((....).))...)))))).)..))))))))))...)))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTGCAGAGCCAGACCTAATATTCTTGGGTCTGCCTGTAGAGCTACACCCAATATCATTGGGTCTGGTTGCTCATGCAG
dot-bracket secondary structure
(((((((((((((((((((..(.((((((..(((....).))...)))))).)..))))))))))...)))).)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12426-akr: 3e-34 microPC no hits | UniProt no hits RFAM MIR474: 0.00006 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
