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ABOUT THIS RECORD
ID:
MNEST052734
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10912-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACACGTCCACGCCCAGCTTGGAGT
miRNA*
TTCGAGTTGGGTGTGGACGCCTCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
GTCTGG
ACACGTCCACGCCCAGCTTGGAGT
GTGGGTCTGGACGCCTCTAGAACCAAC
TTCGAGTTGGGTGTGGACGCCTCC
AGAC
dot-bracket secondary structure
((((((
(..(((((((((((((((((((((
.(((.((((((....)))))).)))))
)))))))))))))))))))..)))
))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10911-akr
:
4e-43
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf10911-akr
from PMRD (
MNEST052733
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record