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ABOUT THIS RECORD
ID:
MNEST052766
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10944-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTCAAGTGGAAGACTCTTCCTG
miRNA*
GCTGGAGTCTACCCTTGATCGGG
mismatches:
3
bulges:
2
View larger
pre-miRNA
TCTTTA
TGTGTCAAGTGGAAGACTCTTCCTG
AAGTCCGGTCAGTTTGTGCCCCTGGCCTCCCTCG
GCTGGAGTCTACCCTTGATCGGG
AAGA
dot-bracket secondary structure
(((((.
((.((((((.((.(((((((..(((
(.(...((((((.........))))))..).)))
)..))))))).)))))))))).)
))))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
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