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ABOUT THIS RECORD
ID:
MNEST052769
species:
Populus trichocarpa
miRNA family:
MIRf256
source:
PMRD, original name:
ptc-miRf10947-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATCAATGGCCATTGTAAGAGT
miRNA*
TCTTACAGTGCCCATTGATTA
mismatches:
1
bulges:
0
View larger
pre-miRNA
CATCTTG
ATCAATGGCCATTGTAAGAGT
AGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGTATTTCAC
TC
TTACAGTGCCCATTGATTA
AGATG
dot-bracket secondary structure
(((((((
((((((((.((((((((((((
.((((...(((.(((((((.........)))))..(((((........)))))...)).)))..))))))
))
)))))))).))))))))))
)))))
SIMILARITIES
miRBase
ptc-MIR475a
:
3e-66
PMRD
ptc-miRf10050-akr
:
3e-66
microPC
miR475
:
1e-62
UniProt
no hits
RFAM
MIR475: 4e-38
Identical with:
miR475
from microPC (
MNEST045347
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
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