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ABOUT THIS RECORD

ID: MNEST052769
species: Populus trichocarpa
miRNA family: MIRf256
source: PMRD, original name: ptc-miRf10947-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCAATGGCCATTGTAAGAGT

miRNA*
TCTTACAGTGCCCATTGATTA

mismatches: 1
bulges: 0

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pre-miRNA
CATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGGTATTTCACTC
TTACAGTGCCCATTGATTA
AGATG


dot-bracket secondary structure
(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))..))))))))
)))))))).))))))))))
)))))



SIMILARITIES
miRBase ptc-MIR475a: 3e-66

PMRD ptc-miRf10050-akr: 3e-66

microPC miR475: 1e-62
UniProt no hits

RFAM MIR475: 4e-38

Identical with: miR475 from microPC (MNEST045347)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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