ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10951-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGCTTGGCAATCAGACCCAA miRNA* GGGTCTGGCTGGTCAGCCAGATC mismatches: 5 bulges: 0 |
pre-miRNA
TGTTGGTTTTGGCTTGGCAATCAGACCCAAAACACTTCCAAAAGGTGTAATAGTGTTGGGTCTGGCTGGTCAGCCAGATCCACA
dot-bracket secondary structure
...(((.(((((((.(.((..((((((((..(((((.((....))......)))))))))))))..)).).))))))).)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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TGTTGGTTTTGGCTTGGCAATCAGACCCAAAACACTTCCAAAAGGTGTAATAGTGTTGGGTCTGGCTGGTCAGCCAGATCCACA
dot-bracket secondary structure
...(((.(((((((.(.((..((((((((..(((((.((....))......)))))))))))))..)).).))))))).)))..
SIMILARITIES| miRBase ptc-MIR474b: 0.00006 PMRD ptc-miRf12443-akr: 2e-42 microPC no hits | UniProt no hits RFAM MIR474: 0.00000000007 |
Identical with: ptc-miRf12443-akr from PMRD (MNEST054265) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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