miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST052800
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10978-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTCTTCCATCAGGCCCTTCTA

miRNA*
GAAGGGGTTGAAGGGGGAAAGG

mismatches: 4
bulges: 0

View larger
pre-miRNA
CAACTGCAAGTTTCTTCCATCAGGCCCTTCTAGACGTTTAGGAGAAGACCTGCACTCTCTCAACCATTAGAATATGGAGACTGCCCTCTAAATATTTTTG
TACCGACATGTTGAAGGGGTTGAAGGGGGAAAGGGTGCTATTTG


dot-bracket secondary structure
.....(((..((((((((.((((.((((((..(((((...((...(((...(((.((((.((............)))))).)))..)))..(((....))
).))...))))))))))).)))).))))))))...)))......



SIMILARITIES
miRBase no hits

PMRD ptc-miRf12424-akr: 4e-78

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf12424-akr from PMRD (MNEST054246)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
download this record





Liczniki na strone;