ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10980-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGACGGAATGATTCCGTCGGTAA miRNA* ACCGAAGGAATATTTCCGTCGGT mismatches: 3 bulges: 0 |
pre-miRNA
ATGGAATTACCGACGGAATGATTCCGTCGGTAAATACCGACAGATTTTGAGACGGACTTATGTCCGTCGGTATAAATTACCGAAGGAATATTTCCGTCGG
TAATTCCGT
dot-bracket secondary structure
((((((((((((((((((..(((((.(((((((((((((((.(((..((((.....)))).))).))))))))...))))))).)))))..)))))))))
)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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ATGGAATTACCGACGGAATGATTCCGTCGGTAAATACCGACAGATTTTGAGACGGACTTATGTCCGTCGGTATAAATTACCGAAGGAATATTTCCGTCGG
TAATTCCGT
dot-bracket secondary structure
((((((((((((((((((..(((((.(((((((((((((((.(((..((((.....)))).))).))))))))...))))))).)))))..)))))))))
)))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10979-akr: 3e-57 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10485-akr from PMRD (MNEST052307) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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