ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf655
source: PMRD, original name: ptc-miRf10982-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCAGGGCAATTCTCCTTTG miRNA* AAGGAGGATAAAGCCCTGTTATT mismatches: 1 bulges: 2 |
pre-miRNA
GAATGGCAGGGCAATTCTCCTTTGGCAAAACAGAAATATGCAGGCATTTATTTCCATGTTCTGTTTGCCAAAGGAGGATAAAGCCCTGTTATTC
dot-bracket secondary structure
((((((((((((.((((((((((((((((.(((((.((((.(((......))).)))))))))))))))))))))))))...))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GAATGGCAGGGCAATTCTCCTTTGGCAAAACAGAAATATGCAGGCATTTATTTCCATGTTCTGTTTGCCAAAGGAGGATAAAGCCCTGTTATTC
dot-bracket secondary structure
((((((((((((.((((((((((((((((.(((((.((((.(((......))).)))))))))))))))))))))))))...))))))))))))
SIMILARITIES| miRBase ptc-MIR399f: 2e-48 PMRD ptc-miR399f: 2e-48 microPC miR399: 0.000001 | UniProt no hits RFAM mir-399: 3e-47 |
Identical with: ptc-miR399f from PMRD (MNEST051752) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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