ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10985-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCACTGA miRNA* TGTGCTCTCTAGTCTTCTGTC mismatches: 1 bulges: 1 |
pre-miRNA
GTTGACAGAAGATAGAGAGCACTGACGATGAAATGCATGGAGCTTAATTGCATCTCACTCCTTTGTGCTCTCTAGTCTTCTGTCATC
dot-bracket secondary structure
..((((((((((((((((((((.((.(((((.(((((...........))))).))).)).)).))))))))).)))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GTTGACAGAAGATAGAGAGCACTGACGATGAAATGCATGGAGCTTAATTGCATCTCACTCCTTTGTGCTCTCTAGTCTTCTGTCATC
dot-bracket secondary structure
..((((((((((((((((((((.((.(((((.(((((...........))))).))).)).)).))))))))).)))))))))))..
SIMILARITIES| miRBase ptc-MIR156h: 3e-44 PMRD ptc-miR156h: 3e-44 microPC miR157: 8e-26 | UniProt no hits RFAM no hits |
Identical with: ptc-MIR156h from miRBase (MNEST041295) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
