ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11003-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGTCGGTAAATCCGTTGGT miRNA* CGATGGATTTACTGACGGAACA mismatches: 0 bulges: 1 |
pre-miRNA
GTTTTGTCCGTCGGTAAATCCGTTGGTAATAGAATTACCGATGGATTTACTGACGGAACAGAC
dot-bracket secondary structure
..((((((((((((((((((((((((((((...))))))))))))))))))))))).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GTTTTGTCCGTCGGTAAATCCGTTGGTAATAGAATTACCGATGGATTTACTGACGGAACAGAC
dot-bracket secondary structure
..((((((((((((((((((((((((((((...))))))))))))))))))))))).))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf12342-akr: 4e-30 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12342-akr from PMRD (MNEST054164) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
