ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11009-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGACGGATCACTTCCGTCGGT miRNA* CGACGGAATTAATCCGTCGGT mismatches: 2 bulges: 0 |
pre-miRNA
TGGGATTTACCGACGGATCACTTCCGTCGGTGAATCCGTCGGTATTGTTTTCACCGACGGATTTAATTGTTGTCACCGACGGAATTAATCCGTCGGTAAA
ACTGG
dot-bracket secondary structure
..((.(((((((((((((.(.((((((((((((((((((((((.........))))))))))..........)))))))))))).).)))))))))))))
.))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGGATTTACCGACGGATCACTTCCGTCGGTGAATCCGTCGGTATTGTTTTCACCGACGGATTTAATTGTTGTCACCGACGGAATTAATCCGTCGGTAAA
ACTGG
dot-bracket secondary structure
..((.(((((((((((((.(.((((((((((((((((((((((.........))))))))))..........)))))))))))).).)))))))))))))
.))..
SIMILARITIES| miRBase no hits PMRD ptc-miRf11284-akr: 2e-42 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
