ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11010-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTCAGCCCCAGCTCCACGTG miRNA* CGTGGGTGCACGGGCCTGACTGA mismatches: 2 bulges: 2 |
pre-miRNA
AGGGCAAGTCAGCCCCAGCTCCACGTGGTGCTCGGGTCTGACCCAGGACAAGGGCAGGTCAGCCCAAGTGTCAGGCATCCTCACGTGGGTGCACGGGCCT
GACTGACACCT
dot-bracket secondary structure
(((...(((((((((..(((((((((((((((.(((.....)))..((((.((((......))))...)))).)))))...)))))))).))..))).))
))))....)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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AGGGCAAGTCAGCCCCAGCTCCACGTGGTGCTCGGGTCTGACCCAGGACAAGGGCAGGTCAGCCCAAGTGTCAGGCATCCTCACGTGGGTGCACGGGCCT
GACTGACACCT
dot-bracket secondary structure
(((...(((((((((..(((((((((((((((.(((.....)))..((((.((((......))))...)))).)))))...)))))))).))..))).))
))))....)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
