ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11023-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCATCATCAAGATTCACA miRNA* AGAATCTTGATGATGCTGCA mismatches: 2 bulges: 0 |
pre-miRNA
TTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGTGATGTTAAGAGTTAAATCTTTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTG
GAAGTGAGAATCTTGATGATGCTGCATCGGCAA
dot-bracket secondary structure
.(((.((((.((((((((((((((((.(((.((((.((..(((.(((((.....((((.((((......)))).))))..))))).)))...))..))))
...))).)))))))))))))))).)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGTGATGTTAAGAGTTAAATCTTTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTG
GAAGTGAGAATCTTGATGATGCTGCATCGGCAA
dot-bracket secondary structure
.(((.((((.((((((((((((((((.(((.((((.((..(((.(((((.....((((.((((......)))).))))..))))).)))...))..))))
...))).)))))))))))))))).)))).))).
SIMILARITIES| miRBase ptc-MIR172b: 1e-71 PMRD ptc-miRf10081-akr: 1e-71 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 3e-70 |
Identical with: ptc-miRf10081-akr from PMRD (MNEST051903) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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