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ABOUT THIS RECORD

ID: MNEST052847
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf11025-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTTATCTGCATTTGCACCT

miRNA*
 GTGCAGGTGCAGGTGAATGC

mismatches: 1
bulges: 0
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pre-miRNA
 AACATGTTGCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAACAAG
CTTGAGGTGCAGGTGCAGGTGCAGGTGAATGCCATGTT

dot-bracket secondary structure
((((((..((.(((((((((((((((((((((((((((((((((((((.((((((.(((((....))))).)))))).)))............)))))))
..))))))))))))))))))))))))))).))))))))


SIMILARITIES
miRBase ptc-MIR530a: 2e-74

PMRD ptc-miR530a: 2e-74

microPC miR1030: 3e-57		UniProt no hits

RFAM MIR530: 3e-73

Identical with: ptc-miRf10082-akr from PMRD (MNEST051904)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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