ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11026-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCATTTGCACCTGCACCTT miRNA* GGTGCAGGTGCAGGTGCAGGT mismatches: 0 bulges: 0 |
pre-miRNA
GCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAACAAGCTTGAGGT
GCAGGTGCAGGTGCAGGTGAATGC
dot-bracket secondary structure
((.(((((((((((((((((((((((((((((((((((((.((((((.(((((....))))).)))))).)))............)))))))..))))))
))))))))))))))))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAACAAGCTTGAGGT
GCAGGTGCAGGTGCAGGTGAATGC
dot-bracket secondary structure
((.(((((((((((((((((((((((((((((((((((((.((((((.(((((....))))).)))))).)))............)))))))..))))))
))))))))))))))))))))).))
SIMILARITIES| miRBase ptc-MIR530a: 3e-66 PMRD ptc-miRf11025-akr: 3e-66 microPC miR1030: 3e-57 | UniProt no hits RFAM MIR530: 6e-65 |
Identical with: ptc-miRf10082-akr from PMRD (MNEST051904) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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