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ABOUT THIS RECORD
ID:
MNEST052850
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11028-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGAGTTTCAGTGTGCTTCC
miRNA*
AGGCACATCAAAGCTCTGATA
mismatches:
3
bulges:
0
View larger
pre-miRNA
GGTGTCATCG
TCGGAGTTTCAGTGTGCTTCC
AGGATTTTTTTTTACTTTTTTCTCTCTCCTATCTCTTCAAAAATTACAAGGAAGAGAGAGGAGAGAAAA
AAACAAAAAATAAATAAAAAGACCTAG
AGGCACATCAAAGCTCTGATA
ATGACATC
dot-bracket secondary structure
((((((((..
(((((((((..(((((((((.
(((.(((((((.....(((((.((((((((.(((((((............))))))).)))))))).))
)))............)))))))))).)
))))))))..)))))))))..
))))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10247-akr
:
0.000002
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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