ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11037-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCCAATCCCATGTTGGGTCT miRNA* GCCCAACCCCATGTTGGGCCTG mismatches: 8 bulges: 0 |
pre-miRNA
GACGCGTCCCCGCCCAATCCCATGTTGGGTCTGGACGCGACCGCGTCCACCTCCATGTTGGACCGGGACGTGTCCTCGCCCAACCCCATGTTGGGCCTGG
ACGCGTC
dot-bracket secondary structure
(((((((((..(((((((.....(((((((..(((((((.(((.(((((.(.....).))))))))..)))))))..))))))).....)))))))..))
)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GACGCGTCCCCGCCCAATCCCATGTTGGGTCTGGACGCGACCGCGTCCACCTCCATGTTGGACCGGGACGTGTCCTCGCCCAACCCCATGTTGGGCCTGG
ACGCGTC
dot-bracket secondary structure
(((((((((..(((((((.....(((((((..(((((((.(((.(((((.(.....).))))))))..)))))))..))))))).....)))))))..))
)))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10949-akr: 0.00000000000009 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
