ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11047-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGATGGATTTACCGACGGAT miRNA* TCCGTCGGTAATTCCATCGGT mismatches: 1 bulges: 1 |
pre-miRNA
GTTAGCGATGGATTTACCGACGGATAATTGAATATTAATATTTCTTAATTATTCCGTCGGTAATTCCATCGGTAAT
dot-bracket secondary structure
((((.(((((((.((((((((((((((((((.............))))))).))))))))))).))))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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GTTAGCGATGGATTTACCGACGGATAATTGAATATTAATATTTCTTAATTATTCCGTCGGTAATTCCATCGGTAAT
dot-bracket secondary structure
((((.(((((((.((((((((((((((((((.............))))))).))))))))))).))))))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11726-akr: 2e-35 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
