ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11058-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCGGCAGGGGACAAAAATG miRNA* TTTTTGTCTCTCGCCGGTCA mismatches: 2 bulges: 0 |
pre-miRNA
ATGGATGGGATCGGCAGGGGACAAAAATGGCATAAGAGAGGTACAGTGGGAGGCAGGAGAAAGACCAATATCTGCCACCCTTCTTTCTCTCTTATGCGTT
TTTGTCTCTCGCCGGTCACACCCGT
dot-bracket secondary structure
((((.((.(((((((..((((((((((((.(((((((((((......(((.((((((.............)))))).))).....)))))))))))))))
))))))))..))))))).)).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
ATGGATGGGATCGGCAGGGGACAAAAATGGCATAAGAGAGGTACAGTGGGAGGCAGGAGAAAGACCAATATCTGCCACCCTTCTTTCTCTCTTATGCGTT
TTTGTCTCTCGCCGGTCACACCCGT
dot-bracket secondary structure
((((.((.(((((((..((((((((((((.(((((((((((......(((.((((((.............)))))).))).....)))))))))))))))
))))))))..))))))).)).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11059-akr: 8e-67 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11059-akr from PMRD (MNEST052881) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
