ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11065-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGATGCCAGTGGCCACTGG miRNA* AGTGGTTCTTGGGGTCATATAT mismatches: 4 bulges: 1 |
pre-miRNA
GGCTGTTATAATGATGCCAGTGGCCACTGGTATCTTACAGCGTCTGCCAAGGGGTCCCACTCAATCCAACGTTGTGGGCAAATTCTGCAAAGCAGTGGTT
CTTGGGGTCATATATTCTGCAGCT
dot-bracket secondary structure
((((((.((((((((.((((..(((((((.(....((((((((.((....(((......)))....)))))))))).(((.....)))..).))))))).
.)))).))))).)))...))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GGCTGTTATAATGATGCCAGTGGCCACTGGTATCTTACAGCGTCTGCCAAGGGGTCCCACTCAATCCAACGTTGTGGGCAAATTCTGCAAAGCAGTGGTT
CTTGGGGTCATATATTCTGCAGCT
dot-bracket secondary structure
((((((.((((((((.((((..(((((((.(....((((((((.((....(((......)))....)))))))))).(((.....)))..).))))))).
.)))).))))).)))...))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8LG88|TDT_ARATH: 0.00000008 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
