ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11195-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGTTTCTCCGGGTCTGAAAT miRNA* TTCAGATCTGCACAATAGATC mismatches: 3 bulges: 1 |
pre-miRNA
ATTTGGTCTTCTGTTTCTCCGGGTCTGAAATCTAAGCCACCTAGGTAATCGACAGAGTCTAGTGATTTCGACGATGATGTAAGTTTCATTTCTTTAAGGG
GCGTAGCTTGATGGTAAAGGGTTTCAGATCTGCACAATAGATCTCGAGT
dot-bracket secondary structure
((((((...((((((....((((((((((((((..((((..(((((.((((.(..((((....))))..).)))).......((..(..........)..
))...))))).))))...))))))))))))))...))))))..))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
ATTTGGTCTTCTGTTTCTCCGGGTCTGAAATCTAAGCCACCTAGGTAATCGACAGAGTCTAGTGATTTCGACGATGATGTAAGTTTCATTTCTTTAAGGG
GCGTAGCTTGATGGTAAAGGGTTTCAGATCTGCACAATAGATCTCGAGT
dot-bracket secondary structure
((((((...((((((....((((((((((((((..((((..(((((.((((.(..((((....))))..).)))).......((..(..........)..
))...))))).))))...))))))))))))))...))))))..))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
