ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11198-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACGGAATTTATTCCGTCGG miRNA* GACAGAATTTATTCCGTCGG mismatches: 3 bulges: 0 |
pre-miRNA
GAAATTACTGACGGAATTTATTCCGTCGGTAAATTCGTTGGTAAACTGTGAACACTGTTCATCATGTCAATTACAAAGAGAATCACCGACAGAATTTATT
CCGTCGGTATTTTC
dot-bracket secondary structure
((((.((((((((((((..((((.((((((..((((....(((((((((((((...))))).)).))...)))).....)))).)))))).))))..)))
))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GAAATTACTGACGGAATTTATTCCGTCGGTAAATTCGTTGGTAAACTGTGAACACTGTTCATCATGTCAATTACAAAGAGAATCACCGACAGAATTTATT
CCGTCGGTATTTTC
dot-bracket secondary structure
((((.((((((((((((..((((.((((((..((((....(((((((((((((...))))).)).))...)))).....)))).)))))).))))..)))
))))))))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11639-akr: 3e-26 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
