ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11211-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGGGCTTGGAGTTGCAG miRNA* GCAACAACAAACCCAAGAGC mismatches: 3 bulges: 0 |
pre-miRNA
ATCCAAGGCTCTTGGGCTTGGAGTTGCAGCCAGACTAAAGAGCGTTGAGTGTGGTTGAAACGTCAGGCCCAAGAACCTTGGGTTTGGCTGCAACAACAAA
CCCAAGAGCGTTGGGT
dot-bracket secondary structure
((((((.(((((((((.(((..((((((((((((((...(((.(((...((.((((((....))).)))))..)))))).))))))))))))))..))).
))))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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ATCCAAGGCTCTTGGGCTTGGAGTTGCAGCCAGACTAAAGAGCGTTGAGTGTGGTTGAAACGTCAGGCCCAAGAACCTTGGGTTTGGCTGCAACAACAAA
CCCAAGAGCGTTGGGT
dot-bracket secondary structure
((((((.(((((((((.(((..((((((((((((((...(((.(((...((.((((((....))).)))))..)))))).))))))))))))))..))).
))))))))).))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10583-akr: 4e-59 microPC no hits | UniProt no hits RFAM MIR474: 3e-51 |
Identical with: ptc-miRf10583-akr from PMRD (MNEST052405) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
