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ABOUT THIS RECORD
ID:
MNEST053038
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11216-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGCTCTCAATCTCCCCCAA
miRNA*
GAGGGAGATTGGGAGCTTCT
mismatches:
2
bulges:
0
View larger
pre-miRNA
GTGGGGAGT
AAGCTCTCAATCTCCCCCAA
AGGCATCCAACATTCTCGTTATTTGAAGCAATTACTATAAACTGAGATATTGGAAGCCTCT
GAGGGAGATT
GGGAGCTTCT
CCAACCAT
dot-bracket secondary structure
((((((((.
((((((((((((((((.((.
((((.(((((...((((.((((...((....))...))))...))))..))))).)))).)
).))))))))
))))))))))
))..))))
SIMILARITIES
miRBase
ptc-MIR477a
:
6e-43
PMRD
ptc-miRf10590-akr
:
3e-57
microPC
no hits
UniProt
no hits
RFAM
MIR477: 1e-50
Identical with:
ptc-miR477a
from PMRD (
MNEST051777
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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