ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11217-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCAATCTCCCCCAAAGGCA miRNA* CCTCTGAGGGAGATTGGGAG mismatches: 3 bulges: 0 |
pre-miRNA
GGAGTAAGCTCTCAATCTCCCCCAAAGGCATCCAACATTCTCGTTATTTGAAGCAATTACTATAAACTGAGATATTGGAAGCCTCTGAGGGAGATTGGGA
GCTTCTCC
dot-bracket secondary structure
((((.((((((((((((((((.((.((((.(((((...((((.((((...((....))...))))...))))..))))).)))).)).))))))))))))
))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGAGTAAGCTCTCAATCTCCCCCAAAGGCATCCAACATTCTCGTTATTTGAAGCAATTACTATAAACTGAGATATTGGAAGCCTCTGAGGGAGATTGGGA
GCTTCTCC
dot-bracket secondary structure
((((.((((((((((((((((.((.((((.(((((...((((.((((...((....))...))))...))))..))))).)))).)).))))))))))))
))))))))
SIMILARITIES| miRBase ptc-MIR477a: 5e-43 PMRD ptc-miRf11216-akr: 1e-56 microPC no hits | UniProt no hits RFAM MIR477: 1e-50 |
Identical with: ptc-miR477a from PMRD (MNEST051777) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
