ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11227-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCCAGACCCAACGTGGGGTTGGGC miRNA* CCAATTTCAGGTTGGGCGTGGACGC mismatches: 6 bulges: 0 |
pre-miRNA
CTGGGACAAGTCCAGACCCAACGTGGGGTTGGGCATGGACGCGTCCAACCCCAACATGAGGTTGAGCCTGCACGCCCCCAAACATAAATTGAGTTTGGGT
GTGGACGCGTTCAGACCCAATTTCAGGTTGGGCGTGGACGCGCCCAG
dot-bracket secondary structure
(((((....(((((..((((((.((..((((((..((((((((((((.........(((((.....))).))....(((((((.........))))))).
.))))))))))))..))))))..)).))))))..)))))...)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTGGGACAAGTCCAGACCCAACGTGGGGTTGGGCATGGACGCGTCCAACCCCAACATGAGGTTGAGCCTGCACGCCCCCAAACATAAATTGAGTTTGGGT
GTGGACGCGTTCAGACCCAATTTCAGGTTGGGCGTGGACGCGCCCAG
dot-bracket secondary structure
(((((....(((((..((((((.((..((((((..((((((((((((.........(((((.....))).))....(((((((.........))))))).
.))))))))))))..))))))..)).))))))..)))))...)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11228-akr: 1e-69 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11228-akr from PMRD (MNEST053050) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
