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ABOUT THIS RECORD

ID: MNEST053060
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf11238-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCTAATCAGGGCACTGCAA

miRNA*
 GCAGTGCCTTGATTTGGGCT

mismatches: 1
bulges: 0
View larger
pre-miRNA
 GAAGGAGGCCCTAATCAGGGCACTGCAATTCTAAATGTCTGTTGGCAAGTGGCGATGCCAGACGTTTGAAATTTACTTATCATTTATTAGTCAGAATTGC
AGTGCCTTGATTTGGGCTTTGTC

dot-bracket secondary structure
....(((((((.((((((((((((((((((((((((((((...((((........)))))))))))).......(((...........))).))))))))
)))))))))))).)))))))...


SIMILARITIES
miRBase ptc-MIR1447: 2e-61

PMRD ptc-miR1447: 2e-61

microPC miR1447: 2e-45		UniProt no hits

RFAM no hits

Identical with: ptc-MIR1447 from miRBase (MNEST041521)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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