ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11243-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACAGGTTAACCCGTCAAATGTT miRNA* GGTTTGACGGGTTAACCTGGTTTG mismatches: 4 bulges: 0 |
pre-miRNA
CGAGCTTAACAGGTTAACCCGTCAAATGTTTTTTTCTATTTAGTTATCAAACTTTCATGACGCAAATCTAAGGTTTGACGGGTTAACCTGGTTTG
dot-bracket secondary structure
(((((....((((((((((((((((((.((.(((((.....((((....)))).....))...)))...)).)))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CGAGCTTAACAGGTTAACCCGTCAAATGTTTTTTTCTATTTAGTTATCAAACTTTCATGACGCAAATCTAAGGTTTGACGGGTTAACCTGGTTTG
dot-bracket secondary structure
(((((....((((((((((((((((((.((.(((((.....((((....)))).....))...)))...)).)))))))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10874-akr: 2e-20 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
