ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11247-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGTCTCGCATGCTTGCCAGACC miRNA* TCTGACAGTCATGCCAGCCCAAA mismatches: 3 bulges: 1 |
pre-miRNA
CGCCTGGGTCTCGCATGCTTGCCAGACCCAAGCGACTTGGGTCTGACAGTCATGCCAGCCCAAACG
dot-bracket secondary structure
((..((((.((.(((((.(((.((((((((((...)))))))))).))).))))).))))))..))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CGCCTGGGTCTCGCATGCTTGCCAGACCCAAGCGACTTGGGTCTGACAGTCATGCCAGCCCAAACG
dot-bracket secondary structure
((..((((.((.(((((.(((.((((((((((...)))))))))).))).))))).))))))..))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11715-akr: 6e-32 microPC no hits | UniProt no hits RFAM MIR474: 0.0000000002 |
Identical with: ptc-miRf11715-akr from PMRD (MNEST053537) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
