ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11249-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATGACTCCTCTGATGCCAACTA miRNA* GTTGGCATCCAGGGAGCCAGGCA mismatches: 4 bulges: 0 |
pre-miRNA
CTGCATGACTCCTCTGATGCCAACTATGAAGAGTCAAGACCACTCGACAAATTTCTTAGTTGGCATCCAGGGAGCCAGGCAG
dot-bracket secondary structure
((((.((.(((((..(((((((((((.((((.(((.((....)).)))...)))).)))))))))))..))))).)).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTGCATGACTCCTCTGATGCCAACTATGAAGAGTCAAGACCACTCGACAAATTTCTTAGTTGGCATCCAGGGAGCCAGGCAG
dot-bracket secondary structure
((((.((.(((((..(((((((((((.((((.(((.((....)).)))...)))).)))))))))))..))))).)).))))
SIMILARITIES| miRBase ptc-MIR160g: 2e-41 PMRD ptc-miR160g: 2e-41 microPC no hits | UniProt no hits RFAM mir-160: 0.000000004 |
Identical with: ptc-miR160g from PMRD (MNEST051614) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
