ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11252-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCCGATTTCTGAATCGGCAGT miRNA* TGCCGATTTCTGAATCAGCAGTGA mismatches: 4 bulges: 0 |
pre-miRNA
ATAGTTTGGCTGCCGATTTCTGAATCGGCAGTAACAGGTTTTGGTTGCCGATTTCTGAATCAGCAGTGACACTGT
dot-bracket secondary structure
(((((.(.(((((.(((((..((((((((((...(((...))).))))))))))..))))).))))).).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
ATAGTTTGGCTGCCGATTTCTGAATCGGCAGTAACAGGTTTTGGTTGCCGATTTCTGAATCAGCAGTGACACTGT
dot-bracket secondary structure
(((((.(.(((((.(((((..((((((((((...(((...))).))))))))))..))))).))))).).)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11654-akr: 0.00000000006 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
