ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11253-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGTGAACACCTGATTCGCTG miRNA* GCGAACACCTGATTCACTGTGG mismatches: 2 bulges: 2 |
pre-miRNA
TCGGCAGTGAACACCTGATTCGCTGCGAAATACACAACTCGACAGCGAACACCTGATTCACTGTGGA
dot-bracket secondary structure
((.((((((((((..((.((((((((((..........))).)))))))))..)).)))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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TCGGCAGTGAACACCTGATTCGCTGCGAAATACACAACTCGACAGCGAACACCTGATTCACTGTGGA
dot-bracket secondary structure
((.((((((((((..((.((((((((((..........))).)))))))))..)).)))))))).))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11254-akr: 2e-32 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11254-akr from PMRD (MNEST053076) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
