ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11257-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACTGAATTCCAGTAGTCTTCG miRNA* AAGATTGCTGGAATTCATTGAG mismatches: 1 bulges: 0 |
pre-miRNA
TGTCGCCCTCACTGAATTCCAGTAGTCTTCGTTTCTTGCTCAAACAACACCTTGAAGATGGATGCTTAATTATGCTAACCAGAAACGAAGATTGCTGGAA
TTCATTGAGGGCGACA
dot-bracket secondary structure
.((((((((((.(((((((((((((((((((((((....((((........))))...(((..((........))...))))))))))))))))))))))
)))).)))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TGTCGCCCTCACTGAATTCCAGTAGTCTTCGTTTCTTGCTCAAACAACACCTTGAAGATGGATGCTTAATTATGCTAACCAGAAACGAAGATTGCTGGAA
TTCATTGAGGGCGACA
dot-bracket secondary structure
.((((((((((.(((((((((((((((((((((((....((((........))))...(((..((........))...))))))))))))))))))))))
)))).)))))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf12115-akr: 4e-59 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12115-akr from PMRD (MNEST053937) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
