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ABOUT THIS RECORD
ID:
MNEST053082
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11260-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCTGCGGACAACACAAATTCCGCAG
miRNA*
GCGGACAACACAATTCAGCAGCGA
mismatches:
10
bulges:
1
View larger
pre-miRNA
TTC
GCTGCGGACAACACAAATTCCGCAG
TGAACACCTGATTCGCTGCGGACAACACAAATTCCGCAGTGAACACCTGATTCGCT
GCGGACAACACAATTC
AGCAGCGA
A
dot-bracket secondary structure
.((
(((((.((..........(((((((
((((((..((.(((((((((((..........)))))))))))))..)).))))))
))))).........))
.)))))))
.
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11261-akr
:
7e-33
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf11261-akr
from PMRD (
MNEST053083
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record