ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11263-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTAATGGTGGCATGTCTT miRNA* GACATGCCACCATTAGAGGAG mismatches: 1 bulges: 0 |
pre-miRNA
AACAATCCTCTAATGGTGGCATGTCTTCATAATATAATTTGTCACTGTTAGATTCTACATCATCATTGTCTCTCGTCACTATTATCCTCTTGTTTAGACA
TGCCACCATTAGAGGAGATGTT
dot-bracket secondary structure
((((.(((((((((((((((((((((..((((.(((((..((.((.(..((((..............))))..))).)).)))))....))))..)))))
))))))))))))))))..))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
AACAATCCTCTAATGGTGGCATGTCTTCATAATATAATTTGTCACTGTTAGATTCTACATCATCATTGTCTCTCGTCACTATTATCCTCTTGTTTAGACA
TGCCACCATTAGAGGAGATGTT
dot-bracket secondary structure
((((.(((((((((((((((((((((..((((.(((((..((.((.(..((((..............))))..))).)).)))))....))))..)))))
))))))))))))))))..))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12117-akr: 5e-65 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12117-akr from PMRD (MNEST053939) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
