ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11271-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCTGATTTCTGAATCGG miRNA* GATTTAGAAATCAACAGCCA mismatches: 1 bulges: 0 |
pre-miRNA
ACACAATTTGGCTGCTGATTTCTGAATCGGGAGCGACGTAGTTGTTGGTTGTCGATTTAGAAATCAACAGCCACATAGTGT
dot-bracket secondary structure
((((.((.((((((.(((((((((((((((.(((((((....)))).))).))))))))))))))).)))))).)).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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ACACAATTTGGCTGCTGATTTCTGAATCGGGAGCGACGTAGTTGTTGGTTGTCGATTTAGAAATCAACAGCCACATAGTGT
dot-bracket secondary structure
((((.((.((((((.(((((((((((((((.(((((((....)))).))).))))))))))))))).)))))).)).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11270-akr: 9e-41 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11270-akr from PMRD (MNEST053092) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
