ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11360-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGACCCAAGAGCTTTGGGTTTG miRNA* GACCCAAAGAGCTTGGATCTCG mismatches: 3 bulges: 0 |
pre-miRNA
TACGCCAGACCCAAGAGCTTTGGGTTTGCGATCATGTCAAATCTAAGGACCTTGGGTCTGACGTGGTATCCAGACCCAAAGAGCTTGGATCTCGCGTG
dot-bracket secondary structure
(((((.(((.(((((..(((((((((((..(((((((((.(((((((...))))))).)))))))))...)))))))))))..))))).))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TACGCCAGACCCAAGAGCTTTGGGTTTGCGATCATGTCAAATCTAAGGACCTTGGGTCTGACGTGGTATCCAGACCCAAAGAGCTTGGATCTCGCGTG
dot-bracket secondary structure
(((((.(((.(((((..(((((((((((..(((((((((.(((((((...))))))).)))))))))...)))))))))))..))))).))).)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10261-akr: 8e-51 microPC no hits | UniProt no hits RFAM MIR474: 0.00002 |
Identical with: ptc-miRf10261-akr from PMRD (MNEST052083) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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