ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11375-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGGGTTGCGTGACCACGTGATCA miRNA* AACACGTGGTCAAGGAACCCACACG mismatches: 3 bulges: 0 |
pre-miRNA
TCTTGATTGTGGGTTGCGTGACCACGTGATCACGAGGTTCGCATCAGCATTTCTATTGGCCAAAGATGAAAAGGGATGTGCAACGAATTTGTGAACAATG
CATTGCTTGCGAACCTCTTGAACACGTGGTCAAGGAACCCACACGCAAAGA
dot-bracket secondary structure
..(((..((((((((.(.((((((((((.(((.((((((((((...((((..((.((.(.......).)).))..))))((((.(...(((....)))..
).)))).)))))))))).))).)))))))))).).))))))))..)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TCTTGATTGTGGGTTGCGTGACCACGTGATCACGAGGTTCGCATCAGCATTTCTATTGGCCAAAGATGAAAAGGGATGTGCAACGAATTTGTGAACAATG
CATTGCTTGCGAACCTCTTGAACACGTGGTCAAGGAACCCACACGCAAAGA
dot-bracket secondary structure
..(((..((((((((.(.((((((((((.(((.((((((((((...((((..((.((.(.......).)).))..))))((((.(...(((....)))..
).)))).)))))))))).))).)))))))))).).))))))))..)))...
SIMILARITIES| miRBase no hits PMRD ptc-miRf12314-akr: 3e-82 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf12314-akr from PMRD (MNEST054136) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
