ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11376-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGGACCCAATAGTGTTGGGTCT miRNA* ACCTAATATCCTTGGCTCTGGTT mismatches: 4 bulges: 0 |
pre-miRNA
GCTGCACAACAGGACCCAATAGTGTTGGGTCTGGCTCAGCCAGACCAAAAACACTTCAAAAATGAGCTGGGTCTGGCTGGACAACGGGACCTAATATCCT
TGGCTCTGGTTGTGCAGC
dot-bracket secondary structure
((((((((((.(((.((((..(((((((((((.(..((((((((((.....((.((((....)))).))))))))))))..)....)))))))))))..)
))).))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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GCTGCACAACAGGACCCAATAGTGTTGGGTCTGGCTCAGCCAGACCAAAAACACTTCAAAAATGAGCTGGGTCTGGCTGGACAACGGGACCTAATATCCT
TGGCTCTGGTTGTGCAGC
dot-bracket secondary structure
((((((((((.(((.((((..(((((((((((.(..((((((((((.....((.((((....)))).))))))))))))..)....)))))))))))..)
))).))).))))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10709-akr: 3e-17 microPC no hits | UniProt no hits RFAM MIR474: 4e-29 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
