ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11383-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATGGGATTTCAGGTTGACCAAGC miRNA* TTTGGTTAAAGGGAATCGCCAGATGG mismatches: 4 bulges: 3 |
pre-miRNA
GAAATCGCCAGATGGGATTTCAGGTTGACCAAGCTACACACATTTTTTTAGTTCCAGTTGAATGAGGTCGCCAGATGGGATCTCAGGTGGCTTTGGTTAA
AGGGAATCGCCAGATGGGATTTC
dot-bracket secondary structure
((((((.(((..(((((((((...(((((((((((((.............((((.....))))((((((.((....))))))))..))))).))))))))
..)))))).)))..)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GAAATCGCCAGATGGGATTTCAGGTTGACCAAGCTACACACATTTTTTTAGTTCCAGTTGAATGAGGTCGCCAGATGGGATCTCAGGTGGCTTTGGTTAA
AGGGAATCGCCAGATGGGATTTC
dot-bracket secondary structure
((((((.(((..(((((((((...(((((((((((((.............((((.....))))((((((.((....))))))))..))))).))))))))
..)))))).)))..)))))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11536-akr: 3e-29 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
