ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11390-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAGTAGCGATTCCATAGCTACTC miRNA* GTAGCGATGGTATCGCTACTATAA mismatches: 4 bulges: 0 |
pre-miRNA
TTCAGCGAGTAGCGATTCCATAGCTACTCCAAGGAAAACGACCTCCGTAAACTCCTGAAAAAGTTTTAGCGCGATGCAACGGTCGGATCAATAGTTTAAC
TAGACCTCCTCTTCCGTGAGTAGCGATGGTATCGCTACTATAATGAA
dot-bracket secondary structure
.(((...(((((((((.((((.(((((((...((((..(((((((((((((((........)))))..))).))......)))))......(((.....)
)).........))))..))))))).)))).)))))))))....))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TTCAGCGAGTAGCGATTCCATAGCTACTCCAAGGAAAACGACCTCCGTAAACTCCTGAAAAAGTTTTAGCGCGATGCAACGGTCGGATCAATAGTTTAAC
TAGACCTCCTCTTCCGTGAGTAGCGATGGTATCGCTACTATAATGAA
dot-bracket secondary structure
.(((...(((((((((.((((.(((((((...((((..(((((((((((((((........)))))..))).))......)))))......(((.....)
)).........))))..))))))).)))).)))))))))....))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11391-akr: 7e-80 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11391-akr from PMRD (MNEST053213) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
