ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11398-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGACGGATTTATTCCGTCGGT miRNA* CGACGGAATAATTCCGTCGGTA mismatches: 1 bulges: 0 |
pre-miRNA
GATGGTTTCGCCGACGGATTTATTCCGTCGGTATATACCGACAGATTTTGAGACGGAATTATTTTCGTCGGTATATATTACCGACGGAATAATTCCGTCG
GTAATTCCGTT
dot-bracket secondary structure
(((((..(..((((((((.(((((((((((((((((((((((.((...(((.......)))...)))))))))))...)))))))))))))).)))))))
)..)..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
GATGGTTTCGCCGACGGATTTATTCCGTCGGTATATACCGACAGATTTTGAGACGGAATTATTTTCGTCGGTATATATTACCGACGGAATAATTCCGTCG
GTAATTCCGTT
dot-bracket secondary structure
(((((..(..((((((((.(((((((((((((((((((((((.((...(((.......)))...)))))))))))...)))))))))))))).)))))))
)..)..)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10664-akr: 1e-46 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11399-akr from PMRD (MNEST053221) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
