ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11411-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAATTCCGTCGGTAATTCC miRNA* AATCACCGACGGAATTTTCC mismatches: 1 bulges: 0 |
pre-miRNA
TTACCGACGGAAAATTCCGTCGGTAATTCCATCGGTAAACTGTGAACACTGTTCATCATGTCAATTACAAAGGGAATCACCGACGGAATTTTCCGTCGGT
AA
dot-bracket secondary structure
.(((((((((((((((((((((((.(((((....(((((((((((((...))))).)).))...))))....))))).))))))))))))))))))))))
).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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TTACCGACGGAAAATTCCGTCGGTAATTCCATCGGTAAACTGTGAACACTGTTCATCATGTCAATTACAAAGGGAATCACCGACGGAATTTTCCGTCGGT
AA
dot-bracket secondary structure
.(((((((((((((((((((((((.(((((....(((((((((((((...))))).)).))...))))....))))).))))))))))))))))))))))
).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11978-akr: 4e-53 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11978-akr from PMRD (MNEST053800) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
