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ABOUT THIS RECORD
ID:
MNEST053237
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11415-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGTCCTTGGCTCGCATGGG
miRNA*
CAGGCGAGCCAAGGACCGTT
mismatches:
3
bulges:
0
View larger
pre-miRNA
AGCCCAAC
TTGTCCTTGGCTCGCATGGG
TTTTCATGTGTTGACAAGTATACTAATCTCCACTCACATTTAAAAACATGAAAACC
CAGGCGAGCCAAGGAC
CGTT
TTGGCT
dot-bracket secondary structure
((((.(((
..(((((((((((((.((((
(((((((((....................................)))))))))))
)).)))))))))))))
.)))
..))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10312-akr
:
3e-44
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
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