ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11430-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCCGATTTCTGGATCAGCAGCGA miRNA* GCTGTTGATTTCTGGATTGGCAGCGA mismatches: 2 bulges: 0 |
pre-miRNA
CGTCGCTGCCGATTTCTGGATCAGCAGCGACGATGTTTTCGCTGTTGATTTTTGAATCGGTAGCTACGCATTTTTCGCTGTTGATTTCTGGATTGGCAGC
GACG
dot-bracket secondary structure
(((((((((((((((..(((((((((((((.(((((....((((..((((....))))..))))...)))))..)))))))))))))..)))))))))))
))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
CGTCGCTGCCGATTTCTGGATCAGCAGCGACGATGTTTTCGCTGTTGATTTTTGAATCGGTAGCTACGCATTTTTCGCTGTTGATTTCTGGATTGGCAGC
GACG
dot-bracket secondary structure
(((((((((((((((..(((((((((((((.(((((....((((..((((....))))..))))...)))))..)))))))))))))..)))))))))))
))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10290-akr: 2e-54 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10290-akr from PMRD (MNEST052112) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
