ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11431-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATATCTTGGGACCTCACCT miRNA* GTGAGATCTCAAGATATTAT mismatches: 2 bulges: 0 |
pre-miRNA
TAATATCAATCATATCTTGGGACCTCACCTAACAGCTTAAACTTTTGGGTTGAATGTTTTTTTGACCCAATAATTTAAACTGTTAGGTGAGATCTCAAGA
TATTATTTATATTA
dot-bracket secondary structure
((((((.(((.(((((((((((.((((((((((((.(((((...((((((..((......))..))))))...))))).)))))))))))).))))))))
))).))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TAATATCAATCATATCTTGGGACCTCACCTAACAGCTTAAACTTTTGGGTTGAATGTTTTTTTGACCCAATAATTTAAACTGTTAGGTGAGATCTCAAGA
TATTATTTATATTA
dot-bracket secondary structure
((((((.(((.(((((((((((.((((((((((((.(((((...((((((..((......))..))))))...))))).)))))))))))).))))))))
))).))).))))))
SIMILARITIES| miRBase ptc-MIR481b: 0.0000000004 PMRD ptc-miRf10693-akr: 1e-34 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
