ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf11440-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGACGGAACGAGTCCGTCGGT miRNA* CGACGGAATTAATCCGTCGGT mismatches: 5 bulges: 0 |
pre-miRNA
CTGGTTTACCGACGGAACGAGTCCGTCGGTGAATCCGTCGGTATTGGTTTCACCGACGGATTTCATTGCTATCACCGACGGAATTAATCCGTCGGTAAAA
CTGG
dot-bracket secondary structure
(..(((((((((((((.....(((((((((((((((((((((.........))))))))))..........))))))))))).....))))))))).)))
)..)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
CTGGTTTACCGACGGAACGAGTCCGTCGGTGAATCCGTCGGTATTGGTTTCACCGACGGATTTCATTGCTATCACCGACGGAATTAATCCGTCGGTAAAA
CTGG
dot-bracket secondary structure
(..(((((((((((((.....(((((((((((((((((((((.........))))))))))..........))))))))))).....))))))))).)))
)..)
SIMILARITIES| miRBase no hits PMRD ptc-miRf11372-akr: 2e-54 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf11372-akr from PMRD (MNEST053194) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
